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chst3b carbohydrate (chondroitin 6) sulfotransferase 3b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102220478, updated on 10-Mar-2024

Summary

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Gene symbol
chst3b
Gene description
carbohydrate (chondroitin 6) sulfotransferase 3b
See related
Ensembl:ENSXMAG00000029528
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
chst3
Orthologs
zebrafish all
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Genomic context

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See chst3b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 10 NC_036452.1 (7861196..7870636)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372179.1 (503487..505380)

Chromosome 10 - NC_036452.1Genomic Context describing neighboring genes Neighboring gene cadherin-related family member 1-like Neighboring gene growth hormone inducible transmembrane protein Neighboring gene paired box protein Pax-2a-like Neighboring gene F-box and leucine-rich repeat protein 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036452.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    7861196..7870636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014474306.2 → XP_014329792.1  carbohydrate sulfotransferase 3

    UniProtKB/TrEMBL
    A0A3B5Q2W7
    Related
    ENSXMAP00000026178.1, ENSXMAT00000027660.1
    Conserved Domains (2) summary
    pfam12024
    Location:30 → 64
    DUF3512; Domain of unknown function (DUF3512)
    cl21551
    Location:222 → 406
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein Strain
Heading Accession and Version

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