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ddx20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102220034, updated on 10-Mar-2024

Summary

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Gene symbol
ddx20
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
See related
Ensembl:ENSXMAG00000007573
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See ddx20 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 1 NC_036443.1 (17703436..17709559, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372538.1 (173614..179787)

Chromosome 1 - NC_036443.1Genomic Context describing neighboring genes Neighboring gene CTTNBP2 N-terminal like b Neighboring gene potassium voltage-gated channel, Shal-related subfamily, member 3 Neighboring gene parapinopsin a Neighboring gene cyclin-dependent kinase 17-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX20
Names
DEAD-box helicase 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036443.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    17703436..17709559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014473386.2 → XP_014328872.1  probable ATP-dependent RNA helicase DDX20

    UniProtKB/TrEMBL
    M3ZZF4
    Related
    ENSXMAP00000007598.1, ENSXMAT00000007606.2
    Conserved Domains (3) summary
    smart00487
    Location:42 → 244
    DEXDc; DEAD-like helicases superfamily
    pfam00271
    Location:259 → 369
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:29 → 230
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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