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LOC102219994 polypeptide N-acetylgalactosaminyltransferase 10-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102219994, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102219994
Gene description
polypeptide N-acetylgalactosaminyltransferase 10-like
See related
Ensembl:ENSXMAG00000015458
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102219994 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 11 NC_036453.1 (10293136..10352648)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372226.1 (1484728..1545078, complement)

Chromosome 11 - NC_036453.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 114 member A2 Neighboring gene microfibril associated protein 3 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene complement C1q-like protein 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036453.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    10293136..10352648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014469255.2 → XP_014324741.1  polypeptide N-acetylgalactosaminyltransferase 10-like

    UniProtKB/TrEMBL
    A0A3B5R2J9, M4AM19
    Related
    ENSXMAP00000037504.1, ENSXMAT00000042422.1
    Conserved Domains (3) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:461 → 589
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
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