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crnkl1 crooked neck pre-mRNA splicing factor 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102218925, updated on 10-Mar-2024

Summary

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Gene symbol
crnkl1
Gene description
crooked neck pre-mRNA splicing factor 1
See related
Ensembl:ENSXMAG00000006896
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See crnkl1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 15 NC_036457.1 (5023896..5029832, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005374013.1 (15431..21257)

Chromosome 15 - NC_036457.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111611352 Neighboring gene CD109 molecule Neighboring gene N-alpha-acetyltransferase 20, NatB catalytic subunit Neighboring gene cilia and flagella associated protein 61 Neighboring gene insulinoma-associated protein 1a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crooked neck-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036457.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    5023896..5029832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005816110.2 → XP_005816167.1  crooked neck-like protein 1

    UniProtKB/TrEMBL
    M3ZXH9
    Related
    ENSXMAP00000006923.1, ENSXMAT00000006932.2
    Conserved Domains (4) summary
    pfam02184
    Location:195 → 226
    HAT; HAT (Half-A-TPR) repeat
    smart00386
    Location:94 → 126
    HAT; HAT (Half-A-TPR) repeats
    COG5107
    Location:71 → 543
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:83 → 108
    TPR; TPR repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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