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smarca5 SNF2 related chromatin remodeling ATPase 5 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102218085, updated on 29-Sep-2024

Summary

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Gene symbol
smarca5
Gene description
SNF2 related chromatin remodeling ATPase 5
See related
Ensembl:ENSXMAG00000009678
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See smarca5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 5 NC_036447.1 (3863257..3874309)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372197.1 (663994..674832, complement)

Chromosome 5 - NC_036447.1Genomic Context describing neighboring genes Neighboring gene GRB2-associated binding protein 1 Neighboring gene ubiquitin specific peptidase 38 Neighboring gene Fras1 related extracellular matrix 3 Neighboring gene uncharacterized LOC111608542

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036447.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    3863257..3874309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005797586.3 → XP_005797643.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

    UniProtKB/TrEMBL
    A0A3B5PSF5, M4A5J1
    Related
    ENSXMAP00000009735.1, ENSXMAT00000009749.2
    Conserved Domains (1) summary
    PLN03142
    Location:73 → 1030
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein Strain
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