U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

galnt17 polypeptide N-acetylgalactosaminyltransferase 17 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102217462, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
galnt17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
See related
Ensembl:ENSXMAG00000013214
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
wbscr17
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See galnt17 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 18 NC_036460.1 (3401874..3428572, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372548.1 (436401..462085)

Chromosome 18 - NC_036460.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor cysteine-rich type 1 protein M130-like Neighboring gene uncharacterized LOC111611986 Neighboring gene uncharacterized LOC111611979 Neighboring gene U2 spliceosomal RNA Neighboring gene rhomboid domain containing 1 Neighboring gene EMAP like 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 17
Names
Williams-Beuren syndrome chromosome region 17

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036460.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    3401874..3428572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014473443.2 → XP_014328929.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

    UniProtKB/TrEMBL
    M4AFN3
    Related
    ENSXMAP00000013277.2, ENSXMAT00000013293.2
    Conserved Domains (4) summary
    cd02510
    Location:192 → 491
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG1215
    Location:187 → 414
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    cd00161
    Location:504 → 629
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:502 → 627
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_023351283.1 → XP_023207051.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X2

    Conserved Domains (2) summary
    pfam00652
    Location:273 → 398
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:5 → 262
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.