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pofut1 protein O-fucosyltransferase 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102217431, updated on 10-Mar-2024

Summary

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Gene symbol
pofut1
Gene description
protein O-fucosyltransferase 1
See related
Ensembl:ENSXMAG00000004262
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See pofut1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 1 NC_036443.1 (5182620..5188023)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372303.1 (575886..580840)

Chromosome 1 - NC_036443.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily protein member 4 Neighboring gene pleiomorphic adenoma gene-like 2 Neighboring gene kinesin family member 3B Neighboring gene protein-L-isoaspartate O-methyltransferase domain-containing protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose protein O-fucosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036443.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    5182620..5188023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005804857.3 → XP_005804914.1  GDP-fucose protein O-fucosyltransferase 1

    UniProtKB/TrEMBL
    M3ZPZ1
    Related
    ENSXMAP00000004284.1, ENSXMAT00000004289.2
    Conserved Domains (2) summary
    cd11302
    Location:35 → 383
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1
    pfam10250
    Location:45 → 377
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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