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srsf6 serine and arginine rich splicing factor 6 [ Pundamilia nyererei ]

Gene ID: 102215037, updated on 31-Jan-2024

Summary

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Gene symbol
srsf6
Gene description
serine and arginine rich splicing factor 6
See related
Ensembl:ENSPNYG00000004944
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
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Genomic context

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See srsf6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187422.1 (2075480..2079771, complement)

NW_005187422.1Genomic Context describing neighboring genes Neighboring gene v-myb avian myeloblastosis viral oncogene homolog-like 2b Neighboring gene intraflagellar transport 52 homolog (Chlamydomonas) Neighboring gene acyl-CoA thioesterase 8 Neighboring gene phosphatase and actin regulator 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187422.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187422.1 Reference PunNye1.0

    Range
    2075480..2079771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005726645.1 → XP_005726702.1  serine/arginine-rich splicing factor 6 isoform X2

    UniProtKB/TrEMBL
    A0A9Y3QWL1
    Related
    ENSPNYP00000006439.1, ENSPNYT00000006598.1
    Conserved Domains (3) summary
    COG0724
    Location:3 → 71
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12596
    Location:3 → 72
    RRM1_SRSF6; RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 6 (SRSF6)
    cd12600
    Location:106 → 177
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

  2. XM_005726644.1 → XP_005726701.1  serine/arginine-rich splicing factor 6 isoform X1

    UniProtKB/TrEMBL
    A0A9Y3VB12
    Conserved Domains (3) summary
    COG0724
    Location:3 → 71
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12596
    Location:3 → 72
    RRM1_SRSF6; RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 6 (SRSF6)
    cd12600
    Location:107 → 178
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
Nucleotide Protein
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