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trub1 TruB pseudouridine (psi) synthase family member 1 [ Pundamilia nyererei ]

Gene ID: 102213046, updated on 10-Mar-2024

Summary

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Gene symbol
trub1
Gene description
TruB pseudouridine (psi) synthase family member 1
See related
Ensembl:ENSPNYG00000018614
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See trub1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187629.1 (131856..137797)

NW_005187629.1Genomic Context describing neighboring genes Neighboring gene Rac family small GTPase 3b Neighboring gene leucine rich repeat containing 45 Neighboring gene hematopoietically expressed homeobox Neighboring gene exocyst complex component 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187629.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA pseudouridine synthase 1
Names
TruB pseudouridine synthase family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187629.1 Reference PunNye1.0

    Range
    131856..137797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005748725.1 → XP_005748782.1  probable tRNA pseudouridine synthase 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4GNR6
    Related
    ENSPNYP00000024645.1, ENSPNYT00000025248.1
    Conserved Domains (2) summary
    TIGR00431
    Location:23 → 247
    TruB; tRNA pseudouridine(55) synthase
    cl00130
    Location:24 → 272
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)

  2. XM_013914832.1 → XP_013770286.1  probable tRNA pseudouridine synthase 1 isoform X2

    UniProtKB/TrEMBL
    A0A9Y6JI26
    Conserved Domains (1) summary
    cl00130
    Location:30 → 220
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
Nucleotide Protein
Heading Accession and Version

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