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pusl1 pseudouridine synthase like 1 [ Pundamilia nyererei ]

Gene ID: 102212236, updated on 10-Mar-2024

Summary

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Gene symbol
pusl1
Gene description
pseudouridine synthase like 1
See related
Ensembl:ENSPNYG00000006588
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See pusl1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187443.1 (3634288..3648073)

NW_005187443.1Genomic Context describing neighboring genes Neighboring gene arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like Neighboring gene ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) Neighboring gene DEAD-box helicase 19b Neighboring gene calcium/calmodulin dependent protein kinase II inhibitor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187443.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine synthase-like 1
Names
pseudouridylate synthase like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187443.1 Reference PunNye1.0

    Range
    3634288..3648073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005731396.1 → XP_005731453.1  tRNA pseudouridine synthase-like 1

    UniProtKB/TrEMBL
    A0A3B4FF85
    Related
    ENSPNYP00000008623.1, ENSPNYT00000008829.1
    Conserved Domains (2) summary
    PRK00021
    Location:6 → 240
    truA; tRNA pseudouridine synthase A; Validated
    cl00130
    Location:9 → 240
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
Nucleotide Protein
Heading Accession and Version

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