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sec24c SEC24 homolog C, COPII coat complex component [ Pundamilia nyererei ]

Gene ID: 102209809, updated on 10-Mar-2024

Summary

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Gene symbol
sec24c
Gene description
SEC24 homolog C, COPII coat complex component
See related
Ensembl:ENSPNYG00000004869
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See sec24c in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187654.1 (408617..431027, complement)

NW_005187654.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase type II subunit gamma Neighboring gene protein NLRC3-like Neighboring gene synaptopodin 2-like protein Neighboring gene myozenin 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187654.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec24C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187654.1 Reference PunNye1.0

    Range
    408617..431027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013915065.1 → XP_013770519.1  protein transport protein Sec24C isoform X4

    UniProtKB/TrEMBL
    A0A3B4F726, A0A9Y6MAP3
    Related
    ENSPNYP00000006390.1, ENSPNYT00000006549.1
    Conserved Domains (8) summary
    COG5028
    Location:401 → 1200
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:611 → 870
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1074 → 1146
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:534 → 571
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:959 → 1055
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:860 → 943
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
    pfam11235
    Location:130 → 293
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    cl10080
    Location:204 → 272
    RPE65; Retinal pigment epithelial membrane protein

  2. XM_005749711.1 → XP_005749768.1  protein transport protein Sec24C isoform X3

    UniProtKB/TrEMBL
    A0A3B4F726, A0A9Y3RYJ8
    Conserved Domains (7) summary
    COG5028
    Location:440 → 1223
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:634 → 893
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1097 → 1169
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:557 → 594
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:982 → 1078
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:883 → 966
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
    cl10080
    Location:204 → 272
    RPE65; Retinal pigment epithelial membrane protein

  3. XM_005749710.1 → XP_005749767.1  protein transport protein Sec24C isoform X2

    UniProtKB/TrEMBL
    A0A3B4F6Z9, A0A9Y3RTU2
    Related
    ENSPNYP00000006365.1, ENSPNYT00000006524.1
    Conserved Domains (7) summary
    COG5028
    Location:428 → 1227
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:638 → 897
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1101 → 1173
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:561 → 598
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:986 → 1082
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:887 → 970
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
    cl10080
    Location:231 → 299
    RPE65; Retinal pigment epithelial membrane protein

  4. XM_005749709.1 → XP_005749766.1  protein transport protein Sec24C isoform X1

    UniProtKB/TrEMBL
    A0A3B4F6Z9, A0A9Y3RUC3
    Conserved Domains (7) summary
    COG5028
    Location:467 → 1250
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:661 → 920
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1124 → 1196
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:584 → 621
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:1009 → 1105
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:910 → 993
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
    cl10080
    Location:231 → 299
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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