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pus3 pseudouridylate synthase 3 [ Pundamilia nyererei ]

Gene ID: 102206585, updated on 10-Mar-2024

Summary

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Gene symbol
pus3
Gene description
pseudouridylate synthase 3
See related
Ensembl:ENSPNYG00000019615
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See pus3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187470.1 (501200..504764)

NW_005187470.1Genomic Context describing neighboring genes Neighboring gene myosin light chain kinase, smooth muscle-like Neighboring gene CD63 antigen-like Neighboring gene dephospho-CoA kinase domain containing Neighboring gene C1q-related factor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187470.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine(38/39) synthase
Names
pseudouridine synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187470.1 Reference PunNye1.0

    Range
    501200..504764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005736376.1 → XP_005736433.1  tRNA pseudouridine(38/39) synthase

    See identical proteins and their annotated locations for XP_005736433.1

    UniProtKB/TrEMBL
    A0A3B4GX56
    Related
    ENSPNYP00000025993.1, ENSPNYT00000026630.1
    Conserved Domains (2) summary
    cd02569
    Location:78 → 343
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like
    COG0101
    Location:76 → 355
    TruA; tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]

  2. XM_005736375.1 → XP_005736432.1  tRNA pseudouridine(38/39) synthase

    See identical proteins and their annotated locations for XP_005736432.1

    UniProtKB/TrEMBL
    A0A3B4GX56
    Conserved Domains (2) summary
    cd02569
    Location:78 → 343
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like
    COG0101
    Location:76 → 355
    TruA; tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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