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gspt1 G1 to S phase transition 1 [ Pundamilia nyererei ]

Gene ID: 102202613, updated on 10-Mar-2024

Summary

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Gene symbol
gspt1
Gene description
G1 to S phase transition 1
See related
Ensembl:ENSPNYG00000002903
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See gspt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187406.1 (2769183..2781008, complement)

NW_005187406.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 238-like Neighboring gene ribosomal L1 domain containing 1 Neighboring gene DNA meiotic recombinase 1 Neighboring gene translocase of outer mitochondrial membrane 22 homolog (yeast)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187406.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation release factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of translation release factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic peptide chain release factor GTP-binding subunit ERF3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187406.1 Reference PunNye1.0

    Range
    2769183..2781008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005721764.2 → XP_005721821.1  eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X2

    UniProtKB/TrEMBL
    A0A3B4F2C7, A0A9Y3QVG8
    Related
    ENSPNYP00000003774.1, ENSPNYT00000003871.1
    Conserved Domains (4) summary
    cd01883
    Location:149 → 365
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:145 → 569
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    cd04089
    Location:374 → 455
    eRF3_II; Domain II of the eukaryotic class II release factor
    cd03704
    Location:461 → 567
    eRF3_C_III; C-terminal domain of eRF3

  2. XM_005721763.2 → XP_005721820.1  eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1

    UniProtKB/TrEMBL
    A0A3B4EZV8, A0A3B4F2C7
    Related
    ENSPNYP00000003755.1, ENSPNYT00000003851.1
    Conserved Domains (4) summary
    cd01883
    Location:164 → 380
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:160 → 584
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    cd04089
    Location:389 → 470
    eRF3_II; Domain II of the eukaryotic class II release factor
    cd03704
    Location:476 → 582
    eRF3_C_III; C-terminal domain of eRF3
Nucleotide Protein
Heading Accession and Version

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