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LOC102202289 RNA-binding protein 4.1-like [ Pundamilia nyererei ]

Gene ID: 102202289, updated on 31-Jan-2024

Summary

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Gene symbol
LOC102202289
Gene description
RNA-binding protein 4.1-like
See related
Ensembl:ENSPNYG00000004662
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
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Genomic context

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See LOC102202289 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005188031.1 (6186..10395)

NW_005188031.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 4.1-like Neighboring gene splicing factor 1 Neighboring gene glycogen phosphorylase, muscle form-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005188031.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 4.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005188031.1 Reference PunNye1.0

    Range
    6186..10395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005754706.2 → XP_005754763.1  RNA-binding protein 4.1-like isoform X2

    See identical proteins and their annotated locations for XP_005754763.1

    UniProtKB/TrEMBL
    A0A9Y3S5T4
    Conserved Domains (2) summary
    cd12343
    Location:3 → 68
    RRM1_2_CoAA_like; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
    cl17169
    Location:78 → 140
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_005754707.2 → XP_005754764.1  RNA-binding protein 4.1-like isoform X3

    See identical proteins and their annotated locations for XP_005754764.1

    UniProtKB/TrEMBL
    A0A9Y3SB20
    Conserved Domains (1) summary
    cl17169
    Location:78 → 139
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_005754704.1 → XP_005754761.1  RNA-binding protein 4.1-like isoform X1

    See identical proteins and their annotated locations for XP_005754761.1

    UniProtKB/TrEMBL
    A0A3B4F8N8
    Conserved Domains (2) summary
    TIGR01648
    Location:3 → 294
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cl17169
    Location:78 → 142
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_005754703.2 → XP_005754760.1  RNA-binding protein 4.1-like isoform X1

    See identical proteins and their annotated locations for XP_005754760.1

    UniProtKB/TrEMBL
    A0A3B4F8N8
    Related
    ENSPNYP00000006034.1, ENSPNYT00000006186.1
    Conserved Domains (2) summary
    TIGR01648
    Location:3 → 294
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cl17169
    Location:78 → 142
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_005754705.1 → XP_005754762.1  RNA-binding protein 4.1-like isoform X1

    See identical proteins and their annotated locations for XP_005754762.1

    UniProtKB/TrEMBL
    A0A3B4F8N8
    Conserved Domains (2) summary
    TIGR01648
    Location:3 → 294
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cl17169
    Location:78 → 142
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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