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exosc2 exosome component 2 [ Pundamilia nyererei ]

Gene ID: 102202204, updated on 11-Apr-2024

Summary

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Gene symbol
exosc2
Gene description
exosome component 2
See related
Ensembl:ENSPNYG00000007383
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See exosc2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187464.1 (77909..82271, complement)

NW_005187464.1Genomic Context describing neighboring genes Neighboring gene RAB14, member RAS oncogene family, like Neighboring gene c-abl oncogene 1, non-receptor tyrosine kinase Neighboring gene RIC1 homolog, RAB6A GEF complex partner 1 Neighboring gene endoplasmic reticulum metallopeptidase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187464.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187464.1 Reference PunNye1.0

    Range
    77909..82271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005735172.1 → XP_005735229.1  exosome complex component RRP4

    See identical proteins and their annotated locations for XP_005735229.1

    UniProtKB/TrEMBL
    A0A3B4FGQ1
    Related
    ENSPNYP00000009755.1, ENSPNYT00000009987.1
    Conserved Domains (2) summary
    COG1097
    Location:24 → 205
    Rrp4; Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
    cd22525
    Location:169 → 285
    KH-I_Rrp4_eukar; type I K homology (KH) RNA-binding domain found in exosome complex component Rrp4 from eukaryote
Nucleotide Protein
Heading Accession and Version

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