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lrrfip2 leucine rich repeat (in FLII) interacting protein 2 [ Pundamilia nyererei ]

Gene ID: 102199489, updated on 10-Mar-2024

Summary

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Gene symbol
lrrfip2
Gene description
leucine rich repeat (in FLII) interacting protein 2
See related
Ensembl:ENSPNYG00000012284
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See lrrfip2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187521.1 (52514..72883, complement)

NW_005187521.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 83 member Ha Neighboring gene mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) Neighboring gene dishevelled-binding antagonist of beta-catenin 2 Neighboring gene SPARC related modular calcium binding 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187521.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat flightless-interacting protein 2
Names
LRR binding FLII interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187521.1 Reference PunNye1.0

    Range
    52514..72883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005742358.1 → XP_005742415.1  leucine-rich repeat flightless-interacting protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3B4G3E5, A0A9Y3VSD3
    Conserved Domains (1) summary
    pfam09738
    Location:271 → 629
    DUF2051; Double stranded RNA binding protein (DUF2051)

  2. XM_005742356.1 → XP_005742413.1  leucine-rich repeat flightless-interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3B4G3E5, A0A9Y3VLC0
    Conserved Domains (1) summary
    pfam09738
    Location:308 → 666
    DUF2051; Double stranded RNA binding protein (DUF2051)

  3. XM_005742357.1 → XP_005742414.1  leucine-rich repeat flightless-interacting protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3B4G3E5, A0A3B4G3I8
    Related
    ENSPNYP00000016308.1, ENSPNYT00000016715.1
    Conserved Domains (1) summary
    pfam09738
    Location:327 → 661
    DUF2051; Double stranded RNA binding protein (DUF2051)

  4. XM_005742359.1 → XP_005742416.1  leucine-rich repeat flightless-interacting protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A3B4G0C3, A0A3B4G3E5
    Related
    ENSPNYP00000016340.1, ENSPNYT00000016748.1
    Conserved Domains (1) summary
    pfam09738
    Location:327 → 620
    DUF2051; Double stranded RNA binding protein (DUF2051)

  5. XM_005742354.1 → XP_005742411.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005742411.1

    UniProtKB/TrEMBL
    A0A3B4G3B1, A0A3B4G3E5
    Related
    ENSPNYP00000016228.1, ENSPNYT00000016636.1
    Conserved Domains (1) summary
    pfam09738
    Location:327 → 685
    DUF2051; Double stranded RNA binding protein (DUF2051)

  6. XM_005742362.1 → XP_005742419.1  leucine-rich repeat flightless-interacting protein 2 isoform X7

    See identical proteins and their annotated locations for XP_005742419.1

    UniProtKB/TrEMBL
    A0A9Y3RU70
    Conserved Domains (3) summary
    pfam05266
    Location:308 → 378
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:53 → 335
    LRRFIP; LRRFIP family
    pfam11932
    Location:351 → 410
    DUF3450; Protein of unknown function (DUF3450)

  7. XM_005742361.2 → XP_005742418.1  leucine-rich repeat flightless-interacting protein 2 isoform X6

    See identical proteins and their annotated locations for XP_005742418.1

    UniProtKB/TrEMBL
    A0A3B4G0H3
    Related
    ENSPNYP00000016392.1, ENSPNYT00000016800.1
    Conserved Domains (2) summary
    pfam05266
    Location:332 → 402
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:53 → 359
    LRRFIP; LRRFIP family

  8. XM_005742355.1 → XP_005742412.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005742412.1

    UniProtKB/TrEMBL
    A0A3B4G3B1, A0A3B4G3E5
    Conserved Domains (1) summary
    pfam09738
    Location:327 → 685
    DUF2051; Double stranded RNA binding protein (DUF2051)
Nucleotide Protein
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