U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sltm SAFB-like, transcription modulator [ Pundamilia nyererei ]

Gene ID: 102199201, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sltm
Gene description
SAFB-like, transcription modulator
See related
Ensembl:ENSPNYG00000013893
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sltm in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187513.1 (1232319..1242157)

NW_005187513.1Genomic Context describing neighboring genes Neighboring gene myosin IEa Neighboring gene ring finger protein 111 Neighboring gene MINDY lysine 48 deubiquitinase 2 Neighboring gene ADAM metallopeptidase domain 10a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005187513.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SAFB-like transcription modulator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187513.1 Reference PunNye1.0

    Range
    1232319..1242157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005741627.1 → XP_005741684.1  SAFB-like transcription modulator isoform X1

    UniProtKB/TrEMBL
    A0A3B4G674
    Related
    ENSPNYP00000018375.1, ENSPNYT00000018837.1
    Conserved Domains (2) summary
    pfam02037
    Location:13 → 47
    SAP; SAP domain
    cl17169
    Location:329 → 402
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_005741628.1 → XP_005741685.1  SAFB-like transcription modulator isoform X2

    UniProtKB/TrEMBL
    A0A9Y3VKR9
    Conserved Domains (2) summary
    pfam02037
    Location:13 → 47
    SAP; SAP domain
    cl17169
    Location:329 → 402
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.