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rbm8a RNA binding motif protein 8A [ Pundamilia nyererei ]

Gene ID: 102197987, updated on 10-Mar-2024

Summary

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Gene symbol
rbm8a
Gene description
RNA binding motif protein 8A
See related
Ensembl:ENSPNYG00000013564
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See rbm8a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187539.1 (1344392..1349517)

NW_005187539.1Genomic Context describing neighboring genes Neighboring gene neurotrophic tyrosine kinase, receptor, type 1 Neighboring gene uncharacterized LOC102197789 Neighboring gene OTU deubiquitinase 7B Neighboring gene myotubularin related protein 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187539.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 8A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187539.1 Reference PunNye1.0

    Range
    1344392..1349517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005744060.2 → XP_005744117.1  RNA-binding protein 8A isoform X1

    See identical proteins and their annotated locations for XP_005744117.1

    UniProtKB/TrEMBL
    A0A3B4G8H9
    Related
    ENSPNYP00000017948.1, ENSPNYT00000018393.1
    Conserved Domains (1) summary
    cd12324
    Location:67 → 154
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

  2. XM_005744061.1 → XP_005744118.1  RNA-binding protein 8A isoform X2

    See identical proteins and their annotated locations for XP_005744118.1

    UniProtKB/TrEMBL
    A0A9Y3RXB2
    Conserved Domains (1) summary
    cd12324
    Location:65 → 152
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins
Nucleotide Protein
Heading Accession and Version

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