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trub2 TruB pseudouridine (psi) synthase family member 2 [ Pundamilia nyererei ]

Gene ID: 102197811, updated on 10-Mar-2024

Summary

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Gene symbol
trub2
Gene description
TruB pseudouridine (psi) synthase family member 2
See related
Ensembl:ENSPNYG00000013666
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See trub2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187413.1 (2813170..2817421)

NW_005187413.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor, alpha Neighboring gene haloacid dehalogenase-like hydrolase domain containing 3 Neighboring gene RAB44, member RAS oncogene family Neighboring gene serine and arginine rich splicing factor 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187413.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA pseudouridine synthase 2
Names
TruB pseudouridine synthase family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187413.1 Reference PunNye1.0

    Range
    2813170..2817421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005724462.1 → XP_005724519.1  probable tRNA pseudouridine synthase 2

    UniProtKB/TrEMBL
    A0A3B4G8Y4
    Related
    ENSPNYP00000018086.1, ENSPNYT00000018534.1
    Conserved Domains (1) summary
    cd02868
    Location:14 → 287
    PseudoU_synth_hTruB2_like; Pseudouridine synthase, humanTRUB2_like
Nucleotide Protein
Heading Accession and Version

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