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GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 [ Capra hircus (goat) ]

Gene ID: 102190714, updated on 1-Aug-2024

Summary

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Gene symbol
GDPD5
Gene description
glycerophosphodiester phosphodiesterase domain containing 5
See related
EnsemblRapid:ENSCHIG00000014683
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See GDPD5 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
18
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 15 NC_030822.1 (28312717..28401238)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 15 NC_022307.1 (51206858..51296648, complement)

Chromosome 15 - NC_030822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108637660 Neighboring gene serpin family H member 1 Neighboring gene 40S ribosomal protein S24-like Neighboring gene kelch like family member 35 Neighboring gene ribosomal protein S3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030822.1 Reference ASM170441v1 Primary Assembly

    Range
    28312717..28401238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013969769.2 → XP_013825223.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A452EMR3, A0AAJ7A3B8
    Related
    ENSCHIP00000013174.2, ENSCHIT00000020966.2
    Conserved Domains (2) summary
    COG0584
    Location:227 → 468
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
    cl14615
    Location:227 → 581
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  2. XM_005689989.3 → XP_005690046.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A452ELY7, A0A452EMR3
    Related
    ENSCHIP00000013165.2, ENSCHIT00000020957.2
    Conserved Domains (2) summary
    COG0584
    Location:227 → 468
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
    cl14615
    Location:227 → 576
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
Heading Accession and Version

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