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PIGV phosphatidylinositol glycan anchor biosynthesis class V [ Capra hircus (goat) ]

Gene ID: 102189531, updated on 1-Aug-2024

Summary

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Gene symbol
PIGV
Gene description
phosphatidylinositol glycan anchor biosynthesis class V
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See PIGV in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 2 NC_030809.1 (9572594..9582394)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 2 NC_022294.1 (125561435..125570907, complement)

Chromosome 2 - NC_030809.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene AT-rich interaction domain 1A Neighboring gene uncharacterized LOC108637297 Neighboring gene zinc finger DHHC-type palmitoyltransferase 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030809.1 Reference ASM170441v1 Primary Assembly

    Range
    9572594..9582394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018056505.1 → XP_017911994.1  GPI mannosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A452FYH8

  2. XM_018056509.1 → XP_017911998.1  GPI mannosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A452FYH8

  3. XM_013974048.2 → XP_013829502.1  GPI mannosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ7A5D5
    Conserved Domains (1) summary
    cl21590
    Location:84 → 429
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  4. XM_013974043.2 → XP_013829497.1  GPI mannosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A452FYH8
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

  5. XM_013974055.2 → XP_013829509.1  GPI mannosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7A5D9
    Conserved Domains (1) summary
    cl21590
    Location:8 → 401
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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