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SF3A1 splicing factor 3a subunit 1 [ Capra hircus (goat) ]

Gene ID: 102189060, updated on 10-Mar-2024

Summary

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Gene symbol
SF3A1
Gene description
splicing factor 3a subunit 1
See related
EnsemblRapid:ENSCHIG00000018642
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See SF3A1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 17 NC_030824.1 (1901658..1920297)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 17 NC_022309.1 (68861234..68879990, complement)

Chromosome 17 - NC_030824.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 215 Neighboring gene coiled-coil domain containing 157 Neighboring gene TBC1 domain family member 10A Neighboring gene cytosolic arginine sensor for mTORC1 subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3A subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030824.1 Reference ASM170441v1 Primary Assembly

    Range
    1901658..1920297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018060984.1 → XP_017916473.1  splicing factor 3A subunit 1

    UniProtKB/TrEMBL
    A0A452F5T5, A0A452F5V2
    Related
    ENSCHIP00000019732.1, ENSCHIT00000027549.2
    Conserved Domains (4) summary
    smart00648
    Location:50 → 103
    SWAP; Suppressor-of-White-APricot splicing regulator
    cd01800
    Location:704 → 786
    Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
    pfam01805
    Location:165 → 215
    Surp; Surp module
    pfam12230
    Location:232 → 472
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
Nucleotide Protein
Heading Accession and Version

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