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LOC102187515 torsin-1A-interacting protein 2 [ Capra hircus (goat) ]

Gene ID: 102187515, updated on 16-Nov-2023

Summary

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Gene symbol
LOC102187515
Gene description
torsin-1A-interacting protein 2
See related
EnsemblRapid:ENSCHIG00000013165
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Also known as
TOR1AIP2
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Genomic context

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See LOC102187515 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 16 NC_030823.1 (59630793..59673689, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 16 NC_022308.1 (58640968..58684774, complement)

Chromosome 16 - NC_030823.1Genomic Context describing neighboring genes Neighboring gene serine-threonine kinase receptor-associated protein Neighboring gene tudor domain containing 5 Neighboring gene family with sequence similarity 163 member A Neighboring gene torsin-1A-interacting protein 2 Neighboring gene torsin 1A interacting protein 1 Neighboring gene centrosomal protein 350 Neighboring gene quiescin sulfhydryl oxidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2
Names
torsin A interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030823.1 Reference ASM170441v1 Primary Assembly

    Range
    59630793..59673689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013970337.2 → XP_013825791.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A452EFG2
    Related
    ENSCHIP00000010748.1, ENSCHIT00000018531.2
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 467
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_018060664.1 → XP_017916153.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A452EFG2

  3. XM_005690936.3 → XP_005690993.1  torsin-1A-interacting protein 2

    See identical proteins and their annotated locations for XP_005690993.1

    UniProtKB/TrEMBL
    A0A452EFG2
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 467
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_005690933.3 → XP_005690990.1  torsin-1A-interacting protein 2

    See identical proteins and their annotated locations for XP_005690990.1

    UniProtKB/TrEMBL
    A0A452EFG2
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 467
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  5. XM_013970336.2 → XP_013825790.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A452EFG2
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 467
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  6. XM_013970335.2 → XP_013825789.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A452EFG2
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 467
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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