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HACD3 3-hydroxyacyl-CoA dehydratase 3 [ Capra hircus (goat) ]

Gene ID: 102186599, updated on 10-Mar-2024

Summary

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Gene symbol
HACD3
Gene description
3-hydroxyacyl-CoA dehydratase 3
See related
EnsemblRapid:ENSCHIG00000020855
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Also known as
PTPLAD1
Orthologs
human mouse all
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Genomic context

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See HACD3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 10 NC_030817.1 (88797810..88828800, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 10 NC_022302.1 (12165606..12196849)

Chromosome 10 - NC_030817.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 4A Neighboring gene U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein pseudogene Neighboring gene solute carrier family 24 member 1 Neighboring gene integrator complex subunit 14 Neighboring gene dipeptidyl peptidase 8 Neighboring gene immunoglobulin superfamily DCC subclass member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Liaoning cashmere goat transcriptome: sequencing, de novo assembly, functional annotation and comparative analysis. Liu H, et al. PLoS One, 2013. PMID 24130835, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3
Names
protein tyrosine phosphatase-like A domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030817.1 Reference ASM170441v1 Primary Assembly

    Range
    88797810..88828800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005685117.3 → XP_005685174.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3

    See identical proteins and their annotated locations for XP_005685174.1

    UniProtKB/TrEMBL
    A0A452FGA7, A0A8C2PF29
    Related
    ENSCHIP00000023200.2, ENSCHIT00000031060.2
    Conserved Domains (2) summary
    cd06465
    Location:8 → 115
    p23_hB-ind1_like; p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) ...
    pfam04387
    Location:195 → 355
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
Nucleotide Protein
Heading Accession and Version

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