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TNRC6B trinucleotide repeat containing adaptor 6B [ Capra hircus (goat) ]

Gene ID: 102186097, updated on 1-Aug-2024

Summary

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Gene symbol
TNRC6B
Gene description
trinucleotide repeat containing adaptor 6B
See related
EnsemblRapid:ENSCHIG00000003491
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See TNRC6B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
27
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 5 NC_030812.1 (110327663..110588893)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 5 NC_022297.1 (102619059..102815776)

Chromosome 5 - NC_030812.1Genomic Context describing neighboring genes Neighboring gene GRB2 related adaptor protein 2 Neighboring gene family with sequence similarity 83 member F Neighboring gene adenylosuccinate lyase Neighboring gene small G protein signaling modulator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6B protein
Names
trinucleotide repeat containing 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030812.1 Reference ASM170441v1 Primary Assembly

    Range
    110327663..110588893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018048802.1 → XP_017904291.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    A0A452DQ13, A0AAJ7K3S8
    Related
    ENSCHIP00000050563.1, ENSCHIT00000063433.1

  2. XM_018048800.1 → XP_017904289.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    A0A452DQ13, A0AAJ7K3S8

  3. XM_018048801.1 → XP_017904290.1  trinucleotide repeat-containing gene 6B protein isoform X2

    UniProtKB/TrEMBL
    A0A452DPZ5, A0A452DQ13
    Related
    ENSCHIP00000044428.1, ENSCHIT00000064662.1

  4. XM_018048799.1 → XP_017904288.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    A0A452DQ13, A0AAJ7K3S8
    Related
    ENSCHIP00000001800.2, ENSCHIT00000005017.2

  5. XM_013964362.2 → XP_013819816.1  trinucleotide repeat-containing gene 6B protein isoform X3

    UniProtKB/TrEMBL
    A0A452DQ13, A0AAJ7A0N6
    Related
    ENSCHIP00000001823.2, ENSCHIT00000005102.2
    Conserved Domains (3) summary
    cd12712
    Location:1592 → 1674
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:934 → 1046
    Ago_hook; Argonaute hook
    pfam16608
    Location:1306 → 1590
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
Heading Accession and Version

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