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CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Capra hircus (goat) ]

Gene ID: 102185714, updated on 1-Aug-2024

Summary

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Gene symbol
CSGALNACT2
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:ENSCHIG00000012477
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See CSGALNACT2 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 28 NC_030835.1 (31935967..31993833, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 28 NC_022320.1 (11482942..11512815)

Chromosome 28 - NC_030835.1Genomic Context describing neighboring genes Neighboring gene FXYD domain containing ion transport regulator 4 Neighboring gene RasGEF domain family member 1A Neighboring gene uncharacterized LOC108634148 Neighboring gene ret proto-oncogene Neighboring gene protein lin-28 homolog A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030835.1 Reference ASM170441v1 Primary Assembly

    Range
    31935967..31993833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018042390.1 → XP_017897879.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7JRN2
    Related
    ENSCHIP00000035749.1, ENSCHIT00000062099.1

  2. XM_018042391.1 → XP_017897880.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A452ECW2, A0AAJ7JRQ5
    Related
    ENSCHIP00000009698.2, ENSCHIT00000017471.2
    Conserved Domains (1) summary
    cl11394
    Location:108 → 549
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_018042392.1 → XP_017897881.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7NKA5

  4. XM_018042393.1 → XP_017897882.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7NKA5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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