U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102184887 putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [ Capra hircus (goat) ]

Gene ID: 102184887, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC102184887
Gene description
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Also known as
ALG13
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102184887 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) X Unlocalized Scaffold NW_017189517.1 (32523247..32596232, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) X NC_022322.1 (16864748..16938267)

NW_017189517.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene TRPC5 opposite strand Neighboring gene chordin-like protein 1 Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG13 homolog Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene doublecortin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
Names
ALG13, UDP-N-acetylglucosaminyltransferase subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NW_017189517.1 Reference ASM170441v1 Primary Assembly

    Range
    32523247..32596232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013976219.2 → XP_013831673.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X5

    UniProtKB/TrEMBL
    A0A452EWI8, A0AAJ7EQ52
    Conserved Domains (1) summary
    cd04508
    Location:228 → 276
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...

  2. XM_013976220.2 → XP_013831674.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X5

    UniProtKB/TrEMBL
    A0A452EWI8, A0AAJ7EQ52
    Conserved Domains (1) summary
    cd04508
    Location:228 → 276
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...

  3. XM_013976217.2 → XP_013831671.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

    UniProtKB/TrEMBL
    A0A452EWI8, A0AAJ7EQ49
    Conserved Domains (2) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease

  4. XM_013976216.2 → XP_013831670.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    UniProtKB/TrEMBL
    A0A452EWI8, A0AAJ7A6P9
    Conserved Domains (2) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease

  5. XM_013976215.2 → XP_013831669.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

    UniProtKB/TrEMBL
    A0A452EWI8, A0AAJ7A676
    Conserved Domains (2) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease

  6. XM_013976218.2 → XP_013831672.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

    UniProtKB/TrEMBL
    A0A452EWI8, A0AAJ7EQ46
    Conserved Domains (3) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    pfam07223
    Location:652 → 853
    DUF1421; Protein of unknown function (DUF1421)
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.