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GNPDA2 glucosamine-6-phosphate deaminase 2 [ Capra hircus (goat) ]

Gene ID: 102182681, updated on 10-Mar-2024

Summary

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Gene symbol
GNPDA2
Gene description
glucosamine-6-phosphate deaminase 2
See related
EnsemblRapid:ENSCHIG00000022756
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See GNPDA2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 6 NC_030813.1 (63888629..63916678, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 6 NC_022298.1 (61492740..61521096, complement)

Chromosome 6 - NC_030813.1Genomic Context describing neighboring genes Neighboring gene Yip1 domain family member 7 Neighboring gene GTP binding elongation factor GUF1 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene kinesin-like protein KIF3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030813.1 Reference ASM170441v1 Primary Assembly

    Range
    63888629..63916678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005681567.3 → XP_005681624.1  glucosamine-6-phosphate isomerase 2

    See identical proteins and their annotated locations for XP_005681624.1

    UniProtKB/TrEMBL
    A0A452FQ40, A0A452FQA4
    Related
    ENSCHIP00000034279.1, ENSCHIT00000065478.1
    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

  2. XM_018049417.1 → XP_017904906.1  glucosamine-6-phosphate isomerase 2

    UniProtKB/TrEMBL
    A0A452FQ40, A0A452FQA4
    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional
Nucleotide Protein
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