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CD44 CD44 molecule (IN blood group) [ Capra hircus (goat) ]

Gene ID: 102182426, updated on 1-Aug-2024

Summary

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Gene symbol
CD44
Gene description
CD44 molecule (IN blood group)
See related
EnsemblRapid:ENSCHIG00000021491
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See CD44 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
17
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 15 NC_030822.1 (17197402..17286604, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 15 NC_022307.1 (62260368..62352409)

Chromosome 15 - NC_030822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106502905 Neighboring gene solute carrier family 1 member 2 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene pyruvate dehydrogenase complex component X Neighboring gene microRNA mir-1343 Neighboring gene APAF1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of macrophage migration inhibitory factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD44 antigen
Names
CD44 molecule (Indian blood group)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030822.1 Reference ASM170441v1 Primary Assembly

    Range
    17197402..17286604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018059241.1 → XP_017914730.1  CD44 antigen isoform X1

    UniProtKB/TrEMBL
    A0A452FJA8
    Related
    ENSCHIP00000024231.1, ENSCHIT00000032091.2

  2. XM_018059245.1 → XP_017914734.1  CD44 antigen isoform X5

    UniProtKB/TrEMBL
    A0AAJ7P1S8
    Related
    ENSCHIP00000024297.2, ENSCHIT00000032157.2

  3. XM_018059244.1 → XP_017914733.1  CD44 antigen isoform X4

    UniProtKB/TrEMBL
    A0A452FIY5
    Related
    ENSCHIP00000024242.1, ENSCHIT00000032102.2

  4. XM_018059242.1 → XP_017914731.1  CD44 antigen isoform X2

    UniProtKB/TrEMBL
    A0AAJ7P1C4
    Related
    ENSCHIP00000043924.1, ENSCHIT00000054829.1

  5. XM_018059243.1 → XP_017914732.1  CD44 antigen isoform X3

    UniProtKB/TrEMBL
    A0AAJ7P1C5
    Related
    ENSCHIP00000034186.1, ENSCHIT00000065214.1

  6. XM_018059246.1 → XP_017914735.1  CD44 antigen isoform X6

    UniProtKB/TrEMBL
    A0A452FIS2

  7. XM_018059247.1 → XP_017914736.1  CD44 antigen isoform X7

    UniProtKB/TrEMBL
    A0A452FIT1, A0A452FJ33

  8. XM_018059249.1 → XP_017914738.1  CD44 antigen isoform X8

    UniProtKB/TrEMBL
    A0A452FJ16, A0A452FJ33
Nucleotide Protein
Heading Accession and Version

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