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SC5D sterol-C5-desaturase [ Capra hircus (goat) ]

Gene ID: 102180515, updated on 1-Aug-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
EnsemblRapid:ENSCHIG00000008144
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 15 NC_030822.1 (50438198..50451958, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 15 NC_022307.1 (30176615..30190221)

Chromosome 15 - NC_030822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106502886 Neighboring gene sortilin related receptor 1 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene tectorin alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Liaoning cashmere goat transcriptome: sequencing, de novo assembly, functional annotation and comparative analysis. Liu H, et al. PLoS One, 2013. PMID 24130835, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030822.1 Reference ASM170441v1 Primary Assembly

    Range
    50438198..50451958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005689562.3 → XP_005689619.2  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A452DVT9, A0AAJ6WMQ3
    Related
    ENSCHIP00000042338.1, ENSCHIT00000055683.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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