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ZRANB1 zinc finger RANBP2-type containing 1 [ Capra hircus (goat) ]

Gene ID: 102180372, updated on 1-Aug-2024

Summary

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Gene symbol
ZRANB1
Gene description
zinc finger RANBP2-type containing 1
See related
EnsemblRapid:ENSCHIG00000023041
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See ZRANB1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 26 NC_030833.1 (7497626..7566182, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 26 NC_022318.1 (42864475..42908369)

Chromosome 26 - NC_030833.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-gamma-like Neighboring gene C-terminal binding protein 2 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene EEF1A lysine methyltransferase 2 Neighboring gene family with sequence similarity 53 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase ZRANB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030833.1 Reference ASM170441v1 Primary Assembly

    Range
    7497626..7566182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018041151.1 → XP_017896640.1  ubiquitin thioesterase ZRANB1 isoform X2

    UniProtKB/TrEMBL
    A0A452FRD0, A0AAJ7NJN4
    Related
    ENSCHIP00000026879.2, ENSCHIT00000034745.2
    Conserved Domains (4) summary
    smart00547
    Location:152 → 175
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:88 → 107
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:438 → 586
    OTU; OTU-like cysteine protease
    pfam18418
    Location:246 → 341
    AnkUBD; Ankyrin ubiquitin-binding domain

  2. XM_005698591.3 → XP_005698648.1  ubiquitin thioesterase ZRANB1 isoform X1

    See identical proteins and their annotated locations for XP_005698648.1

    UniProtKB/TrEMBL
    A0A452FRD0, A0A452FRP9
    Related
    ENSCHIP00000026876.1, ENSCHIT00000034742.2
    Conserved Domains (4) summary
    smart00547
    Location:178 → 201
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:114 → 133
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:464 → 612
    OTU; OTU-like cysteine protease
    pfam18418
    Location:272 → 367
    AnkUBD; Ankyrin ubiquitin-binding domain
Nucleotide Protein
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