U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

XRN1 5'-3' exoribonuclease 1 [ Capra hircus (goat) ]

Gene ID: 102178771, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
XRN1
Gene description
5'-3' exoribonuclease 1
See related
EnsemblRapid:ENSCHIG00000019192
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See XRN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
43
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 1 NC_030808.1 (126111643..126227965)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 1 NC_022293.1 (124163986..124279740)

Chromosome 1 - NC_030808.1Genomic Context describing neighboring genes Neighboring gene plastin 1 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene ATR serine/threonine kinase Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene glycerol kinase 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
5'-3' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030808.1 Reference ASM170441v1 Primary Assembly

    Range
    126111643..126227965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013965964.2 → XP_013821418.2  5'-3' exoribonuclease 1 isoform X5

    UniProtKB/TrEMBL
    A0AAJ7A1L2

  2. XM_018049601.1 → XP_017905090.1  5'-3' exoribonuclease 1 isoform X3

    UniProtKB/TrEMBL
    A0A452F867, A0AAJ7K495

  3. XM_018049608.1 → XP_017905097.1  5'-3' exoribonuclease 1 isoform X4

    UniProtKB/TrEMBL
    A0A452F867, A0AAJ7K5J4

  4. XM_005675483.3 → XP_005675540.2  5'-3' exoribonuclease 1 isoform X1

    UniProtKB/TrEMBL
    A0A452F867, A0AAJ6WIC3
    Related
    ENSCHIP00000040723.1, ENSCHIT00000055817.1

  5. XM_005675484.3 → XP_005675541.2  5'-3' exoribonuclease 1 isoform X2

    UniProtKB/TrEMBL
    A0A452F867, A0AAJ6RYF3
    Related
    ENSCHIP00000020622.2, ENSCHIT00000028458.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.