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SYNJ1 synaptojanin 1 [ Capra hircus (goat) ]

Gene ID: 102176266, updated on 1-Aug-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
EnsemblRapid:ENSCHIG00000005095
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
34
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 1 NC_030808.1 (1282061..1376560)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 1 NC_022293.1 (2159376..2252358)

Chromosome 1 - NC_030808.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030808.1 Reference ASM170441v1 Primary Assembly

    Range
    1282061..1376560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018047095.1 → XP_017902584.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7NQ88
    Related
    ENSCHIP00000002480.2, ENSCHIT00000007794.2

  2. XM_018047483.1 → XP_017902972.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A452DS05, A0AAJ7NQ62
    Related
    ENSCHIP00000002519.2, ENSCHIT00000007944.2

  3. XM_018047148.1 → XP_017902637.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7K0U7

  4. XM_018047262.1 → XP_017902751.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7K077

  5. XM_018047361.1 → XP_017902850.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7NPZ9

  6. XM_018047413.1 → XP_017902902.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7K029

  7. XM_018047201.1 → XP_017902690.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7JZQ3

  8. XM_018047537.1 → XP_017903026.1  synaptojanin-1 isoform X13

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7K1U0

  9. XM_018047458.1 → XP_017902947.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A452DRT1, A0A452DS01
    Related
    ENSCHIP00000002491.2, ENSCHIT00000007837.2

  10. XM_018047310.1 → XP_017902799.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A452DS01, A0AAJ7JZM6

  11. XM_018047514.1 → XP_017903003.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A452DS05, A0AAJ7NQ10

  12. XM_018047528.1 → XP_017903017.1  synaptojanin-1 isoform X12

    UniProtKB/TrEMBL
    A0A452DS05, A0AAJ7NQ77
    Related
    ENSCHIP00000002513.2, ENSCHIT00000007923.2

  13. XM_018047503.1 → XP_017902992.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A452DS05, A0AAJ7K088
Nucleotide Protein
Heading Accession and Version

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