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PTCD2 pentatricopeptide repeat domain 2 [ Capra hircus (goat) ]

Gene ID: 102175520, updated on 10-Mar-2024

Summary

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Gene symbol
PTCD2
Gene description
pentatricopeptide repeat domain 2
See related
EnsemblRapid:ENSCHIG00000017118
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See PTCD2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 20 NC_030827.1 (9265770..9298315, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 20 NC_022312.1 (9206054..9237988, complement)

Chromosome 20 - NC_030827.1Genomic Context describing neighboring genes Neighboring gene histone H2B subacrosomal variant Neighboring gene zinc finger protein 366 Neighboring gene mitochondrial ribosomal protein S27 Neighboring gene microtubule associated protein 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030827.1 Reference ASM170441v1 Primary Assembly

    Range
    9265770..9298315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005694568.3 → XP_005694625.1  pentatricopeptide repeat-containing protein 2, mitochondrial

    UniProtKB/TrEMBL
    A0A452EYJ9, A0A8C2PA39
    Related
    ENSCHIP00000017151.2, ENSCHIT00000024960.2
    Conserved Domains (2) summary
    sd00004
    Location:133 → 155
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:100 → 208
    MRP-S27; Mitochondrial 28S ribosomal protein S27
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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