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LOC102175466 mannose-binding protein A [ Capra hircus (goat) ]

Gene ID: 102175466, updated on 16-Nov-2023

Summary

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Gene symbol
LOC102175466
Gene description
mannose-binding protein A
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
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Genomic context

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See LOC102175466 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 28 NC_030835.1 (10194994..10200526)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 28 NC_022320.1 (33234013..33239546, complement)

Chromosome 28 - NC_030835.1Genomic Context describing neighboring genes Neighboring gene methionine adenosyltransferase 1A Neighboring gene pulmonary surfactant-associated protein A Neighboring gene ribonuclease UK114 pseudogene Neighboring gene surfactant protein D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannose-binding protein A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030835.1 Reference ASM170441v1 Primary Assembly

    Range
    10194994..10200526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005699265.3 → XP_005699322.1  mannose-binding protein A

    UniProtKB/TrEMBL
    A0A452ES18
    Conserved Domains (2) summary
    cd03591
    Location:136 → 246
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:43 → 98
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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