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NOP58 NOP58 ribonucleoprotein [ Capra hircus (goat) ]

Gene ID: 102174252, updated on 1-Aug-2024

Summary

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Gene symbol
NOP58
Gene description
NOP58 ribonucleoprotein
See related
EnsemblRapid:ENSCHIG00000025013
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See NOP58 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 2 NC_030809.1 (45107319..45130755, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 2 NC_022294.1 (90088618..90112113)

Chromosome 2 - NC_030809.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 117 member B Neighboring gene bone morphogenetic protein receptor type 2 Neighboring gene small ubiquitin like modifier 1 Neighboring gene KIAA2012 ortholog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Liaoning cashmere goat transcriptome: sequencing, de novo assembly, functional annotation and comparative analysis. Liu H, et al. PLoS One, 2013. PMID 24130835, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein 58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030809.1 Reference ASM170441v1 Primary Assembly

    Range
    45107319..45130755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005676381.3 → XP_005676438.1  nucleolar protein 58 isoform X1

    UniProtKB/TrEMBL
    A0A452G1J7, A0AAJ6RZI8
    Related
    ENSCHIP00000030160.2, ENSCHIT00000038030.2
    Conserved Domains (3) summary
    smart00931
    Location:162 → 213
    NOSIC; NOSIC (NUC001) domain
    pfam01798
    Location:168 → 396
    Nop; snoRNA binding domain, fibrillarin
    pfam08156
    Location:2 → 66
    NOP5NT; NOP5NT (NUC127) domain

  2. XM_013971132.2 → XP_013826586.1  nucleolar protein 58 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7KQC2
    Conserved Domains (2) summary
    smart00931
    Location:99 → 150
    NOSIC; NOSIC (NUC001) domain
    pfam01798
    Location:105 → 333
    Nop; snoRNA binding domain, fibrillarin

  3. XM_018060778.1 → XP_017916267.1  nucleolar protein 58 isoform X2

    UniProtKB/TrEMBL
    A0AAJ7KQ70

  4. XM_018060791.1 → XP_017916280.1  nucleolar protein 58 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7KQC2
Nucleotide Protein
Heading Accession and Version

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