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EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 [ Capra hircus (goat) ]

Gene ID: 102174143, updated on 1-Aug-2024

Summary

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Gene symbol
EDEM3
Gene description
ER degradation enhancing alpha-mannosidase like protein 3
See related
EnsemblRapid:ENSCHIG00000014241
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See EDEM3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
21
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 16 NC_030823.1 (64355890..64425128, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 16 NC_022308.1 (63374274..63443508, complement)

Chromosome 16 - NC_030823.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase PLK1-like Neighboring gene HIG1 domain family member 1A, mitochondrial pseudogene Neighboring gene niban apoptosis regulator 1 Neighboring gene 40S ribosomal protein S4, X isoform-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030823.1 Reference ASM170441v1 Primary Assembly

    Range
    64355890..64425128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018060717.1 → XP_017916206.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7KQU7

  2. XM_018060718.1 → XP_017916207.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7KQ31

  3. XM_018060716.1 → XP_017916205.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7KQ73

  4. XM_018060712.1 → XP_017916201.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7P2R6

  5. XM_018060711.1 → XP_017916200.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7P2R6

  6. XM_018060715.1 → XP_017916204.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7P363
    Related
    ENSCHIP00000012549.2, ENSCHIT00000020339.2

  7. XM_018060713.1 → XP_017916202.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7P2R3

  8. XM_018060714.1 → XP_017916203.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A452EKT8, A0AAJ7P2L7
Nucleotide Protein
Heading Accession and Version

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