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PRPF31 pre-mRNA processing factor 31 [ Capra hircus (goat) ]

Gene ID: 102173179, updated on 1-Aug-2024

Summary

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Gene symbol
PRPF31
Gene description
pre-mRNA processing factor 31
See related
EnsemblRapid:ENSCHIG00000021020
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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See PRPF31 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 18 NC_030825.1 (64839706..64851222, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) Unplaced Scaffold NW_005101661.1 (6117..18798)

Chromosome 18 - NC_030825.1Genomic Context describing neighboring genes Neighboring gene membrane bound O-acyltransferase domain containing 7 Neighboring gene transmembrane channel like 4 Neighboring gene leukocyte receptor cluster member 1 Neighboring gene CCR4-NOT transcription complex subunit 3 Neighboring gene TCF3 fusion partner Neighboring gene NADH:ubiquinone oxidoreductase subunit A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030825.1 Reference ASM170441v1 Primary Assembly

    Range
    64839706..64851222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018063449.1 → XP_017918938.1  U4/U6 small nuclear ribonucleoprotein Prp31

    UniProtKB/TrEMBL
    A0A452FGR3, A0AAJ7KV60
    Conserved Domains (2) summary
    pfam01798
    Location:100 → 330
    Nop; snoRNA binding domain, fibrillarin
    pfam09785
    Location:337 → 465
    Prp31_C; Prp31 C terminal domain

  2. XM_018063450.1 → XP_017918939.1  U4/U6 small nuclear ribonucleoprotein Prp31

    UniProtKB/TrEMBL
    A0A452FGR3, A0AAJ7KV60
    Related
    ENSCHIP00000023466.2, ENSCHIT00000031326.2
    Conserved Domains (2) summary
    pfam01798
    Location:100 → 330
    Nop; snoRNA binding domain, fibrillarin
    pfam09785
    Location:337 → 465
    Prp31_C; Prp31 C terminal domain
Nucleotide Protein
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