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TOR1AIP1 torsin 1A interacting protein 1 [ Sus scrofa (pig) ]

Gene ID: 102165030, updated on 17-Aug-2024

Summary

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Official Symbol
TOR1AIP1provided by VGNC
Official Full Name
torsin 1A interacting protein 1provided by VGNC
Primary source
VGNC:VGNC:94317
See related
Ensembl:ENSSSCG00000032621
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 17.3), kidney (RPKM 15.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TOR1AIP1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (121515691..121566799)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (133362871..133391167, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 163 member A Neighboring gene torsin-1A-interacting protein 2 Neighboring gene torsin 1A interacting protein 2 Neighboring gene centrosomal protein 350 Neighboring gene quiescin sulfhydryl oxidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: torsin-1A-interacting protein 1
Names
torsin A interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    121515691..121566799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021063744.1 → XP_020919403.1  LOW QUALITY PROTEIN: torsin-1A-interacting protein 1

    UniProtKB/TrEMBL
    A0A8D2BBG2
    Related
    ENSSSCP00000051554.1, ENSSSCT00000037108.2
    Conserved Domains (1) summary
    pfam05609
    Location:171 → 588
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein Strain
Heading Accession and Version

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