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OXSM 3-oxoacyl-ACP synthase, mitochondrial [ Sus scrofa (pig) ]

Gene ID: 102162360, updated on 17-Aug-2024

Summary

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Official Symbol
OXSMprovided by VGNC
Official Full Name
3-oxoacyl-ACP synthase, mitochondrialprovided by VGNC
Primary source
VGNC:VGNC:91117
See related
Ensembl:ENSSSCG00000011215
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 12.2), liver (RPKM 11.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See OXSM in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (12685893..12692148)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (14291830..14296658)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II beta Neighboring gene N-glycanase 1 Neighboring gene uncharacterized LOC110256539 Neighboring gene uncharacterized LOC106505556

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    12685893..12692148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021071439.1 → XP_020927098.1  3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

    UniProtKB/TrEMBL
    A0A8D1CTN9, A0A8D1PNT1, F1RS43
    Related
    ENSSSCP00000011964.3, ENSSSCT00000012281.5
    Conserved Domains (1) summary
    cd00834
    Location:43 → 457
    KAS_I_II; Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen ...
Nucleotide Protein
Heading Accession and Version

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