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TNRC6B trinucleotide repeat containing adaptor 6B [ Sus scrofa (pig) ]

Gene ID: 102159442, updated on 17-Aug-2024

Summary

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Official Symbol
TNRC6Bprovided by VGNC
Official Full Name
trinucleotide repeat containing adaptor 6Bprovided by VGNC
Primary source
VGNC:VGNC:94293
See related
Ensembl:ENSSSCG00000000078
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 4.8), lung (RPKM 4.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TNRC6B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (8052434..8311811, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (5418164..5430080, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507467 Neighboring gene adenylosuccinate lyase Neighboring gene microRNA mir-7134 Neighboring gene 40S ribosomal protein S12 pseudogene Neighboring gene uncharacterized LOC102162756 Neighboring gene family with sequence similarity 83 member F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6B protein
Names
trinucleotide repeat containing 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    8052434..8311811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021092847.1 → XP_020948506.1  trinucleotide repeat-containing gene 6B protein isoform X4

    UniProtKB/TrEMBL
    A0A8D0HX86, A0A8D1BI92
    Conserved Domains (3) summary
    cd12712
    Location:1726 → 1808
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:1002 → 1144
    Ago_hook; Argonaute hook
    pfam16608
    Location:1443 → 1724
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  2. XM_021092845.1 → XP_020948504.1  trinucleotide repeat-containing gene 6B protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVL4, A0A4X1W1I6, A0A8D1VVB3
    Conserved Domains (3) summary
    cd12712
    Location:1625 → 1707
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:958 → 1100
    Ago_hook; Argonaute hook
    pfam16608
    Location:1342 → 1623
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  3. XM_021092843.1 → XP_020948502.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    A0A4X1W085, A0A8D1N797
    Conserved Domains (3) summary
    cd12712
    Location:1669 → 1751
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:1002 → 1144
    Ago_hook; Argonaute hook
    pfam16608
    Location:1386 → 1667
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  4. XM_021092846.1 → XP_020948505.1  trinucleotide repeat-containing gene 6B protein isoform X3

    UniProtKB/TrEMBL
    A0A8D1SAI3, A0A8D1TJY8
    Related
    ENSSSCP00000032960.2, ENSSSCT00000038352.3
    Conserved Domains (3) summary
    cd12712
    Location:1589 → 1671
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:922 → 1064
    Ago_hook; Argonaute hook
    pfam16608
    Location:1306 → 1587
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
Heading Accession and Version

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