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SLC27A5 solute carrier family 27 member 5 [ Sus scrofa (pig) ]

Gene ID: 102158419, updated on 17-Aug-2024

Summary

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Official Symbol
SLC27A5provided by VGNC
Official Full Name
solute carrier family 27 member 5provided by VGNC
Primary source
VGNC:VGNC:93039
See related
Ensembl:ENSSSCG00000031449
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 250.0) and mixtures (RPKM 88.1) See more
Orthologs
human mouse all
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Genomic context

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See SLC27A5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (63068880..63075246, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003539410.1 (112..568, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene zinc finger protein 324A-like Neighboring gene zinc finger protein 446 Neighboring gene zinc finger and BTB domain containing 45 Neighboring gene tripartite motif containing 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ketone body biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride mobilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bile acyl-CoA synthetase
Names
bile acyl-CoA synthetase pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    63068880..63075246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097370.1 → XP_020953029.1  bile acyl-CoA synthetase isoform X1

    UniProtKB/TrEMBL
    A0A8D0P166
    Conserved Domains (1) summary
    cl17068
    Location:141 → 717
    AFD_class_I; Adenylate forming domain, Class I superfamily

  2. XM_021097371.1 → XP_020953030.1  bile acyl-CoA synthetase isoform X2

    UniProtKB/TrEMBL
    A0A8D0P166, A0A8D0UNS2
    Related
    ENSSSCP00000063417.2, ENSSSCT00000076198.2
    Conserved Domains (1) summary
    cl17068
    Location:141 → 700
    AFD_class_I; Adenylate forming domain, Class I superfamily

  3. XM_021097372.1 → XP_020953031.1  bile acyl-CoA synthetase isoform X3

    UniProtKB/TrEMBL
    A0A480QIA8, A0A4X1W3I9, A0A8D0P5R6
    Related
    ENSSSCP00000054107.3, ENSSSCT00000046975.3
    Conserved Domains (1) summary
    cl17068
    Location:141 → 680
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
Heading Accession and Version

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