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ARSB arylsulfatase B [ Sus scrofa (pig) ]

Gene ID: 102158016, updated on 17-Aug-2024

Summary

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Official Symbol
ARSBprovided by VGNC
Official Full Name
arylsulfatase Bprovided by VGNC
Primary source
VGNC:VGNC:96794
See related
Ensembl:ENSSSCG00000038535
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 54.6), mixtures (RPKM 14.0) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ARSB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (87614938..87779553, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (89559337..89591727)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene secretory carrier membrane protein 1 Neighboring gene LHFPL tetraspan subfamily member 2 Neighboring gene uncharacterized LOC110259406 Neighboring gene uncharacterized LOC110259405 Neighboring gene dimethylglycine dehydrogenase Neighboring gene betaine--homocysteine S-methyltransferase 2 Neighboring gene betaine--homocysteine S-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
arylsulfatase B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    87614938..87779553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084478.1 → XP_020940137.1  arylsulfatase B isoform X1

    UniProtKB/TrEMBL
    A0A287A1K2, A0A8D1GRV9
    Related
    ENSSSCP00000037802.3, ENSSSCT00000060137.3
    Conserved Domains (1) summary
    cd16029
    Location:46 → 489
    4-S; N-acetylgalactosamine 4-sulfatase, also called arylsulftase B

  2. XM_021084479.1 → XP_020940138.1  arylsulfatase B isoform X2

    UniProtKB/TrEMBL
    A0A5G2RGV5
    Related
    ENSSSCP00000070490.1, ENSSSCT00000078639.2
    Conserved Domains (1) summary
    cd16029
    Location:46 → 398
    4-S; N-acetylgalactosamine 4-sulfatase, also called arylsulftase B
Nucleotide Protein
Heading Accession and Version

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