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LOC102153942 transcription factor SPT20 homolog [ Canis lupus familiaris (dog) ]

Gene ID: 102153942, updated on 22-Jan-2024

Summary

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Gene symbol
LOC102153942
Gene description
transcription factor SPT20 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC102153942 in Genome Data Viewer
Location:
chromosome: X
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (24539997..24552071, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (29487308..29499393, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (24683613..24695681, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (24581753..24593827, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (24588025..24600101, complement)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119868425 Neighboring gene uncharacterized LOC111094666 Neighboring gene interleukin 1 receptor accessory protein like 1 Neighboring gene small nucleolar RNA U2-30 Neighboring gene small nucleolar RNA U2-19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: transcription factor SPT20 homolog; transcription factor SPT20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    24539997..24552071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038449708.1 → XP_038305636.1  transcription factor SPT20 homolog

    UniProtKB/TrEMBL
    A0A8C0K021
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 224
    Spt20; Spt20 family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    24581753..24593827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038523147.1 → XP_038379075.1  transcription factor SPT20 homolog

    Conserved Domains (1) summary
    pfam12090
    Location:64 → 224
    Spt20; Spt20 family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    24588025..24600101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038651635.1 → XP_038507563.1  LOW QUALITY PROTEIN: transcription factor SPT20 homolog

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    24683613..24695681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038587124.1 → XP_038443052.1  transcription factor SPT20 homolog

    UniProtKB/TrEMBL
    A0A8C0K021
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 224
    Spt20; Spt20 family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    29487308..29499393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014111707.3 → XP_013967182.1  transcription factor SPT20 homolog

    UniProtKB/TrEMBL
    A0A8C0K021
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 224
    Spt20; Spt20 family
Nucleotide Protein
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