U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYNJ1 synaptojanin 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102145009, updated on 12-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSMFAG00000018883
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SYNJ1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 3 NC_088377.1 (14169065..14271389)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 3 NC_052257.1 (148706669..148809248, complement)

Chromosome 3 - NC_088377.1Genomic Context describing neighboring genes Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene uncharacterized LOC123572408 Neighboring gene cilia and flagella associated protein 298 Neighboring gene t-complex 10 like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088377.1 Reference T2T-MFA8v1.0

    Range
    14169065..14271389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045389244.2 → XP_045245179.2  synaptojanin-1 isoform X1

  2. XM_045389248.2 → XP_045245183.2  synaptojanin-1 isoform X4

  3. XM_045389250.2 → XP_045245185.2  synaptojanin-1 isoform X6

  4. XM_045389251.2 → XP_045245186.2  synaptojanin-1 isoform X8

  5. XM_045389246.2 → XP_045245181.2  synaptojanin-1 isoform X3

  6. XM_045389253.2 → XP_045245188.2  synaptojanin-1 isoform X9

  7. XM_045389258.2 → XP_045245193.2  synaptojanin-1 isoform X14

  8. XM_045389245.2 → XP_045245180.2  synaptojanin-1 isoform X2

  9. XM_045389249.2 → XP_045245184.2  synaptojanin-1 isoform X5

  10. XM_045389255.2 → XP_045245190.2  synaptojanin-1 isoform X12

  11. XM_045389257.2 → XP_045245192.2  synaptojanin-1 isoform X13

  12. XM_045389259.2 → XP_045245194.2  synaptojanin-1 isoform X15

  13. XM_045389261.2 → XP_045245196.2  synaptojanin-1 isoform X18

  14. XM_045389260.2 → XP_045245195.2  synaptojanin-1 isoform X16

  15. XM_045389256.2 → XP_045245191.2  synaptojanin-1 isoform X12

  16. XM_065541415.1 → XP_065397487.1  synaptojanin-1 isoform X11

  17. XM_045389254.2 → XP_045245189.2  synaptojanin-1 isoform X10

  18. XM_045389262.2 → XP_045245197.2  synaptojanin-1 isoform X19

  19. XM_065541412.1 → XP_065397484.1  synaptojanin-1 isoform X11

  20. XM_065541413.1 → XP_065397485.1  synaptojanin-1 isoform X11

  21. XM_065541414.1 → XP_065397486.1  synaptojanin-1 isoform X11

  22. XM_065541411.1 → XP_065397483.1  synaptojanin-1 isoform X7

  23. XM_065541417.1 → XP_065397489.1  synaptojanin-1 isoform X17

  24. XM_015446912.3 → XP_015302398.3  synaptojanin-1 isoform X17

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.