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THUMPD3 THUMP domain containing 3 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102142044, updated on 1-Aug-2024

Summary

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Gene symbol
THUMPD3
Gene description
THUMP domain containing 3
See related
Ensembl:ENSMFAG00000044884
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See THUMPD3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 2 NC_088376.1 (147625540..147649158)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 2 NC_052256.1 (55345135..55367921, complement)

Chromosome 2 - NC_088376.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA43 Neighboring gene RAD18 E3 ubiquitin protein ligase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene phosphoglycerate mutase 1-like Neighboring gene WAS/WASL-interacting protein family member 1-like Neighboring gene SET domain containing 5 Neighboring gene uncharacterized LOC135969372

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine(6)-N2)-methyltransferase THUMP3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088376.1 Reference T2T-MFA8v1.0

    Range
    147625540..147649158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065538915.1 → XP_065394987.1  tRNA (guanine(6)-N2)-methyltransferase THUMP3 isoform X1

    UniProtKB/TrEMBL
    A0A2K5VQ92, A0A7N9D0J0

  2. XM_005547716.4 → XP_005547773.1  tRNA (guanine(6)-N2)-methyltransferase THUMP3 isoform X1

    See identical proteins and their annotated locations for XP_005547773.1

    UniProtKB/TrEMBL
    A0A2K5VQ92, A0A7N9D0J0
    Conserved Domains (2) summary
    cd11715
    Location:40 → 286
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:293 → 478
    UPF0020; Putative RNA methylase family UPF0020

  3. XM_005547713.4 → XP_005547770.1  tRNA (guanine(6)-N2)-methyltransferase THUMP3 isoform X1

    See identical proteins and their annotated locations for XP_005547770.1

    UniProtKB/TrEMBL
    A0A2K5VQ92, A0A7N9D0J0
    Conserved Domains (2) summary
    cd11715
    Location:40 → 286
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:293 → 478
    UPF0020; Putative RNA methylase family UPF0020

  4. XM_045384767.2 → XP_045240702.1  tRNA (guanine(6)-N2)-methyltransferase THUMP3 isoform X2

    UniProtKB/TrEMBL
    A0A7N9D0J0

  5. XM_005547715.4 → XP_005547772.1  tRNA (guanine(6)-N2)-methyltransferase THUMP3 isoform X1

    See identical proteins and their annotated locations for XP_005547772.1

    UniProtKB/TrEMBL
    A0A2K5VQ92, A0A7N9D0J0
    Conserved Domains (2) summary
    cd11715
    Location:40 → 286
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:293 → 478
    UPF0020; Putative RNA methylase family UPF0020
Nucleotide Protein
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