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ATRNL1 attractin like 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102141391, updated on 10-Oct-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
See related
Ensembl:ENSMFAG00000003582
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 9 NC_088383.1 (124124808..124964403)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 9 NC_052263.1 (110781521..111605262)

Chromosome 9 - NC_088383.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL15-like Neighboring gene U6 spliceosomal RNA Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene large ribosomal subunit protein eL37-like Neighboring gene uncharacterized LOC135965194 Neighboring gene GDNF family receptor alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
  2. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088383.1 Reference T2T-MFA8v1.0

    Range
    124124808..124964403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045362239.2 → XP_045218174.1  attractin-like protein 1 isoform X6

    Conserved Domains (9) summary
    cd03597
    Location:602 → 728
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:308 → 454
    PLN02153; epithiospecifier protein
    PLN02193
    Location:154 → 241
    PLN02193; nitrile-specifier protein
    cd00055
    Location:867 → 912
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:375 → 428
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:743 → 792
    PSI; Plexin repeat
    pfam13854
    Location:206 → 246
    Kelch_5; Kelch motif
    cl00049
    Location:3 → 62
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl19567
    Location:89 → 134
    DSL; Delta serrate ligand

  2. XM_005566518.4 → XP_005566575.1  attractin-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005566575.1

    UniProtKB/TrEMBL
    A0A2K5WB84
    Related
    ENSMFAP00000034296.1
    Conserved Domains (8) summary
    cd03597
    Location:747 → 873
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:92 → 207
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1012 → 1057
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:520 → 573
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:888 → 937
    PSI; Plexin repeat
    pfam13418
    Location:467 → 513
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:351 → 391
    Kelch_5; Kelch motif
    cl19567
    Location:234 → 279
    DSL; Delta serrate ligand

  3. XM_015456748.3 → XP_015312234.1  attractin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5WB84
    Conserved Domains (8) summary
    cd03597
    Location:747 → 873
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:92 → 207
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1012 → 1057
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:520 → 573
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:888 → 937
    PSI; Plexin repeat
    pfam13418
    Location:467 → 513
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:351 → 391
    Kelch_5; Kelch motif
    cl19567
    Location:234 → 279
    DSL; Delta serrate ligand

  4. XM_005566520.4 → XP_005566577.1  attractin-like protein 1 isoform X3

    See identical proteins and their annotated locations for XP_005566577.1

    UniProtKB/TrEMBL
    A0A2K5WB84
    Conserved Domains (7) summary
    cd03597
    Location:747 → 873
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:92 → 207
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:520 → 573
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:888 → 937
    PSI; Plexin repeat
    pfam13418
    Location:467 → 513
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:351 → 391
    Kelch_5; Kelch motif
    cl19567
    Location:234 → 279
    DSL; Delta serrate ligand

  5. XM_005566521.4 → XP_005566578.1  attractin-like protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005566578.1

    UniProtKB/TrEMBL
    A0A2K5WB84
    Conserved Domains (8) summary
    cd03597
    Location:747 → 873
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:92 → 207
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:939 → 984
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:520 → 573
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:888 → 937
    PSI; Plexin repeat
    pfam13418
    Location:467 → 513
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:351 → 391
    Kelch_5; Kelch motif
    cl19567
    Location:234 → 279
    DSL; Delta serrate ligand

  6. XM_065521454.1 → XP_065377526.1  attractin-like protein 1 isoform X5

Nucleotide Protein
Heading Accession and Version

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