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APTX aprataxin [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102135987, updated on 10-Oct-2024

Summary

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Gene symbol
APTX
Gene description
aprataxin
See related
Ensembl:ENSMFAG00000043141
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
FHA-HIT; QflA-14784
Orthologs
human mouse all
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Genomic context

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See APTX in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 15 NC_088389.1 (66080357..66159991)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 15 NC_052269.1 (62508379..62538336, complement)

Chromosome 15 - NC_088389.1Genomic Context describing neighboring genes Neighboring gene EKC/KEOPS complex subunit LAGE3-like Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 Neighboring gene transcription elongation factor A protein 1-like Neighboring gene uncharacterized LOC135967419 Neighboring gene argininosuccinate synthase-like Neighboring gene bolA-like protein 3 Neighboring gene uncharacterized LOC123569146 Neighboring gene uncharacterized LOC135967420 Neighboring gene transmembrane protein 215

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA 5'-adenosine monophosphate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-strand break-containing DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aprataxin
Names
Forkhead-associated domain histidine triad-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088389.1 Reference T2T-MFA8v1.0

    Range
    66080357..66159991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065530427.1 → XP_065386499.1  aprataxin isoform X4

  2. XM_005581547.4 → XP_005581604.3  aprataxin isoform X3

    UniProtKB/TrEMBL
    A0A2K5VE64

  3. XM_015437087.3 → XP_015292573.3  aprataxin isoform X9

    UniProtKB/TrEMBL
    A0A7N9D499

  4. XM_045373354.2 → XP_045229289.2  aprataxin isoform X1

  5. XM_045373356.2 → XP_045229291.2  aprataxin isoform X7

  6. XM_045373355.2 → XP_045229290.2  aprataxin isoform X5

  7. XM_005581546.4 → XP_005581603.4  aprataxin isoform X2

  8. XM_005581548.4 → XP_005581605.4  aprataxin isoform X6

  9. XM_065530428.1 → XP_065386500.1  aprataxin isoform X8

  10. XM_065530426.1 → XP_065386498.1  aprataxin isoform X3

    UniProtKB/TrEMBL
    A0A2K5VE64
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9BGQ0.1 GenPept UniProtKB/Swiss-Prot:Q9BGQ0

Gene LinkOut

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