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OCLN occludin [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102126920, updated on 1-Aug-2024

Summary

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Gene symbol
OCLN
Gene description
occludin
See related
Ensembl:ENSMFAG00000034647
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See OCLN in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 6 NC_088380.1 (75176142..75235586)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 6 NC_052260.1 (66567511..66626896)

Chromosome 6 - NC_088380.1Genomic Context describing neighboring genes Neighboring gene MARVEL domain containing 2 Neighboring gene small ribosomal subunit protein eS27-like Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA U13 Neighboring gene general transcription factor IIH subunit 2 Neighboring gene NLR family apoptosis inhibitory protein Neighboring gene uncharacterized LOC123573977

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
occludin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088380.1 Reference T2T-MFA8v1.0

    Range
    75176142..75235586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065546364.1 → XP_065402436.1  occludin isoform X2

  2. XM_005557098.4 → XP_005557155.1  occludin isoform X1

    See identical proteins and their annotated locations for XP_005557155.1

    UniProtKB/TrEMBL
    A0A2K5WHM0, A0A8J8XBB2, G7P7N9
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 263
    MARVEL; Membrane-associating domain
    pfam07303
    Location:420 → 519
    Occludin_ELL; Occludin homology domain

  3. XM_065546365.1 → XP_065402437.1  occludin isoform X3

  4. XM_015451590.3 → XP_015307076.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A2K5WHM0, A0A8J8XBB2, G7P7N9
    Related
    ENSMFAP00000036636.1
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 263
    MARVEL; Membrane-associating domain
    pfam07303
    Location:420 → 519
    Occludin_ELL; Occludin homology domain

  5. XM_005557097.4 → XP_005557154.1  occludin isoform X1

    See identical proteins and their annotated locations for XP_005557154.1

    UniProtKB/TrEMBL
    A0A2K5WHM0, A0A8J8XBB2, G7P7N9
    Related
    ENSMFAP00000036627.1
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 263
    MARVEL; Membrane-associating domain
    pfam07303
    Location:420 → 519
    Occludin_ELL; Occludin homology domain

  6. XM_065546363.1 → XP_065402435.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A2K5WHM0, A0A8J8XBB2, G7P7N9
Nucleotide Protein
Heading Accession and Version

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