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SGMS1 sphingomyelin synthase 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102126212, updated on 10-Oct-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
See related
Ensembl:ENSMFAG00000002389
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 9 NC_088383.1 (95938681..96252426, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 9 NC_052263.1 (82634001..82947421, complement)

Chromosome 9 - NC_088383.1Genomic Context describing neighboring genes Neighboring gene APOBEC1 complementation factor Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC135965145 Neighboring gene protein SHQ1 homolog Neighboring gene uncharacterized LOC102131195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088383.1 Reference T2T-MFA8v1.0

    Range
    95938681..96252426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065521104.1 → XP_065377176.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  2. XM_005565861.4 → XP_005565918.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005565918.1

    UniProtKB/TrEMBL
    A0A2K5TZB4, G7PDG5
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_065521105.1 → XP_065377177.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  4. XM_065521106.1 → XP_065377178.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  5. XM_065521101.1 → XP_065377173.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  6. XM_045362152.2 → XP_045218087.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  7. XM_005565864.4 → XP_005565921.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005565921.1

    UniProtKB/TrEMBL
    A0A2K5TZB4, G7PDG5
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  8. XM_065521099.1 → XP_065377171.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  9. XM_065521095.1 → XP_065377167.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  10. XM_065521107.1 → XP_065377179.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X2

  11. XM_005565857.4 → XP_005565914.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005565914.1

    UniProtKB/TrEMBL
    A0A2K5TZB4, G7PDG5
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  12. XM_065521094.1 → XP_065377166.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  13. XM_065521108.1 → XP_065377180.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X2

  14. XM_015456358.3 → XP_015311844.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4, G7PDG5
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  15. XM_065521093.1 → XP_065377165.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  16. XM_045362148.2 → XP_045218083.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  17. XM_045362142.2 → XP_045218077.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  18. XM_045362150.2 → XP_045218085.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  19. XM_005565862.4 → XP_005565919.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005565919.1

    UniProtKB/TrEMBL
    A0A2K5TZB4, G7PDG5
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  20. XM_065521100.1 → XP_065377172.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  21. XM_065521102.1 → XP_065377174.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  22. XM_005565858.4 → XP_005565915.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005565915.1

    UniProtKB/TrEMBL
    A0A2K5TZB4, G7PDG5
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  23. XM_045362151.2 → XP_045218086.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  24. XM_065521103.1 → XP_065377175.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  25. XM_065521097.1 → XP_065377169.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  26. XM_065521098.1 → XP_065377170.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5TZB4

  27. XM_045362153.2 → XP_045218088.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X3

    Conserved Domains (1) summary
    pfam14360
    Location:47 → 120
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

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